Nephrology
Clinical factors associated with hospital mortality in critically ill adult COVID-19 patients with AKI requiring CRRT: A multicenter study.
Link: https://doi.org/10.5414/CN111404 Authors: Cama-Olivares, Augusto; Tamhane, Ashutosh; Ortiz-Soriano, Victor; Farrell, Douglas; Wen, Huei Hsun; Takeuchi, Tomonori; Devansh, Patel; Galasso, Francesco; Chen, Jin; Chan, Lili; Tolwani, Ashita J; Nadkarni, Girish N; Neyra, Javier A Abstract: Acute…
Peripheral Transcriptomics in Acute and Long-Term Kidney Dysfunction in SARS-CoV2 Infection.
Link: https://doi.org/10.34067/KID.0000000727 Authors: Jayaraman, Pushkala; Rajagopal, Madhumitha; Paranjpe, Ishan; Suarez-Farinas, Mayte; Liharska, Lora; Thompson, Ryan; Del Valle, Diane Marie; Beckmann, Noam; Lund, Anina N; Gownivaripally, Pooja; Oh, Wonsuk; Gulamali, Faris F; Kauffman, Justin; Gonzalez-Kozlova, Edgar;…
KidneyintelX.dkd: An Innovation in Precision Medicine for Diabetic Kidney Disease.
Link: https://doi.org/10.1681/ASN.0000000644 Authors: Coca, Steven G; Nadkarni, Girish N Abstract:
Natural Language Processing Identifies Under-Documentation of Symptoms in Patients on Hemodialysis.
Link: https://doi.org/10.34067/KID.0000000694 Authors: Dai, Yang; Wen, Huei Hsun; Yang, Joanna; Gupta, Neepa; Rhee, Connie; Horowitz, Carol R; Mohottige, Dinushika; Nadkarni, Girish N; Coca, Steven; Chan, Lili Abstract: Patients on hemodialysis (HD) have a high burden…
Effect of Tiered Implementation of Clinical Decision Support System for Acute Kidney Injury and Nephrotoxin Exposure in Cardiac Surgery Patients.
Link: https://doi.org/10.1055/s-0044-1791822 Authors: Justice, Christopher M; Nevin, Connor; Neely, Rebecca L; Dilcher, Brian; Kovacic-Scherrer, Nicole; Carter-Templeton, Heather; Ostrowski, Aaron; Krafcheck, Jacob; Smith, Gordon; McCarthy, Paul; Pincavitch, Jami; Kane-Gill, Sandra; Freeman, Robert; Kellum, John A; Kohli-Seth,…
The Role of Kt/V and Creatinine clearance on Assisting Optimization of Serum Phosphorus Levels among Patients on PD.
Link: https://doi.org/10.34067/KID.0000000618 Authors: Uribarri, Jaime; Guedes, Murilo; Diaz Bessone, Maria Ines; Chan, Lili; De La Torre, Andres; Mermelstein, Ariella; Garcia-Garcia, Guillermo; Raimann, Jochen; Moraes, Thyago; Peters, Vincent; Konings, Stijn; Farrell, Doug; Sharma, Shuchita; Guinsburg, Adrian;…
Cardiology
Time-to-Event Genome-Wide Association Study for Incident Cardiovascular Disease in People With Type 2 Diabetes.
Link: https://doi.org/10.2337/dc23-2274 Authors: Kwak, Soo Heon; Hernandez-Cancela, Ryan B; DiCorpo, Daniel A; Condon, David E; Merino, Jordi; Wu, Peitao; Brody, Jennifer A; Yao, Jie; Guo, Xiuqing; Ahmadizar, Fariba; Meyer, Mariah; Sincan, Murat; Mercader, Josep M;…
Large language model uncertainty proxies: discrimination and calibration for medical diagnosis and treatment.
Link: https://doi.org/10.1093/jamia/ocae254 Authors: Savage, Thomas; Wang, John; Gallo, Robert; Boukil, Abdessalem; Patel, Vishwesh; Safavi-Naini, Seyed Amir Ahmad; Soroush, Ali; Chen, Jonathan H Abstract: The inability of large language models (LLMs) to communicate uncertainty is a…
Deep Learning-Based Electrocardiogram Analysis Predicts Biventricular Dysfunction and Dilation in Congenital Heart Disease.
Link: https://doi.org/S0735-1097(24)07676-9 Authors: Mayourian, Joshua; Gearhart, Addison; La Cava, William G; Vaid, Akhil; Nadkarni, Girish N; Triedman, John K; Powell, Andrew J; Wald, Rachel M; Valente, Anne Marie; Geva, Tal; Duong, Son Q; Ghelani, Sunil…
Artificial intelligence-guided detection of under-recognised cardiomyopathies on point-of-care cardiac ultrasonography: a multicentre study.
Link: https://doi.org/S2589-7500(24)00249-8 Authors: Oikonomou, Evangelos K; Vaid, Akhil; Holste, Gregory; Coppi, Andreas; McNamara, Robert L; Baloescu, Cristiana; Krumholz, Harlan M; Wang, Zhangyang; Apakama, Donald J; Nadkarni, Girish N; Khera, Rohan Abstract: Point-of-care ultrasonography (POCUS) enables…
The impact of common and rare genetic variants on bradyarrhythmia development.
Link: https://doi.org/10.1038/s41588-024-01978-2 Authors: Weng, Lu-Chen; Rämö, Joel T; Jurgens, Sean J; Khurshid, Shaan; Chaffin, Mark; Hall, Amelia Weber; Morrill, Valerie N; Wang, Xin; Nauffal, Victor; Sun, Yan V; Beer, Dominik; Lee, Simon; Nadkarni, Girish N;…
Effect of Tiered Implementation of Clinical Decision Support System for Acute Kidney Injury and Nephrotoxin Exposure in Cardiac Surgery Patients.
Link: https://doi.org/10.1055/s-0044-1791822 Authors: Justice, Christopher M; Nevin, Connor; Neely, Rebecca L; Dilcher, Brian; Kovacic-Scherrer, Nicole; Carter-Templeton, Heather; Ostrowski, Aaron; Krafcheck, Jacob; Smith, Gordon; McCarthy, Paul; Pincavitch, Jami; Kane-Gill, Sandra; Freeman, Robert; Kellum, John A; Kohli-Seth,…
Critical Care
Transforming Cardiovascular Care With Artificial Intelligence: From Discovery to Practice: JACC State-of-the-Art Review.
Link: https://doi.org/S0735-1097(24)07195-X Authors: Khera, Rohan; Oikonomou, Evangelos K; Nadkarni, Girish N; Morley, Jessica R; Wiens, Jenna; Butte, Atul J; Topol, Eric J Abstract: Artificial intelligence (AI) has the potential to transform every facet of cardiovascular…
Local large language models for privacy-preserving accelerated review of historic echocardiogram reports.
Link: https://doi.org/10.1093/jamia/ocae085 Authors: Vaid, Akhil; Duong, Son Q; Lampert, Joshua; Kovatch, Patricia; Freeman, Robert; Argulian, Edgar; Croft, Lori; Lerakis, Stamatios; Goldman, Martin; Khera, Rohan; Nadkarni, Girish N Abstract: The study developed framework that leverages an…
Evaluating the accuracy of a state-of-the-art large language model for prediction of admissions from the emergency room.
Link: https://doi.org/10.1093/jamia/ocae103 Authors: Glicksberg, Benjamin S; Timsina, Prem; Patel, Dhaval; Sawant, Ashwin; Vaid, Akhil; Raut, Ganesh; Charney, Alexander W; Apakama, Donald; Carr, Brendan G; Freeman, Robert; Nadkarni, Girish N; Klang, Eyal Abstract: Artificial intelligence (AI)…
Deep Learning-Based Electrocardiogram Analysis Predicts Biventricular Dysfunction and Dilation in Congenital Heart Disease.
Link: https://doi.org/S0735-1097(24)07676-9 Authors: Mayourian, Joshua; Gearhart, Addison; La Cava, William G; Vaid, Akhil; Nadkarni, Girish N; Triedman, John K; Powell, Andrew J; Wald, Rachel M; Valente, Anne Marie; Geva, Tal; Duong, Son Q; Ghelani, Sunil…
Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model.
Link: https://doi.org/10.1093/jamia/ocae260 Authors: Patra, Braja Gopal; Lepow, Lauren A; Kasi Reddy Jagadeesh Kumar, Praneet; Vekaria, Veer; Sharma, Mohit Manoj; Adekkanattu, Prakash; Fennessy, Brian; Hynes, Gavin; Landi, Isotta; Sanchez-Ruiz, Jorge A; Ryu, Euijung; Biernacka, Joanna M;…
Clinical factors associated with hospital mortality in critically ill adult COVID-19 patients with AKI requiring CRRT: A multicenter study.
Link: https://doi.org/10.5414/CN111404 Authors: Cama-Olivares, Augusto; Tamhane, Ashutosh; Ortiz-Soriano, Victor; Farrell, Douglas; Wen, Huei Hsun; Takeuchi, Tomonori; Devansh, Patel; Galasso, Francesco; Chen, Jin; Chan, Lili; Tolwani, Ashita J; Nadkarni, Girish N; Neyra, Javier A Abstract: Acute…
Post-operative Care
Modular Fluted Tapered Stems for Periprosthetic Femoral Fractures: Excellent Results in 171 Cases.
Link: https://doi.org/10.2106/JBJS.21.01168 Authors: Hannon, Charles P; Sheehan, Kevin P; Duong, Stephanie Q; Yuan, Brandon J; Lewallen, David G; Berry, Daniel J; Abdel, Matthew P Abstract: Modular fluted tapered (MFT) stems have advanced treatment of Vancouver…
Does Bariatric Surgery Prior to Primary Total Knee Arthroplasty Improve Outcomes?
Link: https://doi.org/S0883-5403(22)00199-1 Authors: Ryan, Sean P; Couch, Cory G; Duong, Stephanie Q; Taunton, Michael J; Lewallen, David G; Berry, Daniel J; Abdel, Matthew P Abstract: Recent advancements in bariatric surgical techniques have increased its utilization…
Frank Stinchfield Award: Does Bariatric Surgery Prior to Primary Total Hip Arthroplasty Really Improve Outcomes?
Link: https://doi.org/S0883-5403(22)00101-2 Authors: Ryan, Sean P; Couch, Cory G; Duong, Stephanie Q; Taunton, Michael J; Lewallen, David G; Berry, Daniel J; Abdel, Matthew P Abstract: Optimal management of morbid obesity before total hip arthroplasty (THA)…
Increasing Prevalence of Frailty and Its Association with Readmission and Mortality Among Hospitalized Patients with IBD.
Link: https://doi.org/10.1007/s10620-020-06746-w Authors: Faye, Adam S; Wen, Timothy; Soroush, Ali; Ananthakrishnan, Ashwin N; Ungaro, Ryan; Lawlor, Garrett; Attenello, Frank J; Mack, William J; Colombel, Jean-Frederic; Lebwohl, Benjamin Abstract: Although age is often used as a…
Characterization of Patients Who Return to Hospital Following Discharge from Hospitalization for COVID-19.
Link: https://doi.org/10.1007/s11606-020-06120-6 Authors: Somani, Sulaiman S; Richter, Felix; Fuster, Valentin; De Freitas, Jessica K; Naik, Nidhi; Sigel, Keith; , ; Bottinger, Erwin P; Levin, Matthew A; Fayad, Zahi; Just, Allan C; Charney, Alexander W; Zhao,…
Increased mortality, morbidities, and costs after heart transplantation in heterotaxy syndrome and other complex situs arrangements.
Link: https://doi.org/S0022-5223(18)32970-2 Authors: Duong, Son Q; Godown, Justin; Soslow, Jonathan H; Thurm, Cary; Hall, Matt; Sainathan, Sandeep; Morell, Victor O; Dodd, Debra A; Feingold, Brian Abstract: Identify pediatric heart transplant (HT) recipients with heterotaxy and…
Gastroenterology
Physiological Data Collected From Wearable Devices Identify and Predict Inflammatory Bowel Disease Flares.
Link: https://doi.org/10.1053/j.gastro.2024.12.024 Authors: Hirten, Robert P; Danieletto, Matteo; Sanchez-Mayor, Milagros; Whang, Jessica K; Lee, Kyung Won; Landell, Kyle; Zweig, Micol; Helmus, Drew; Fuchs, Thomas J; Fayad, Zahi A; Nadkarni, Girish N; Keefer, Laurie; Suarez-Farinas, Mayte;…
Deep Learning and Gastric Cancer: Systematic Review of AI-Assisted Endoscopy.
Link: https://doi.org/10.3390/diagnostics13243613 Authors: Klang, Eyal; Sourosh, Ali; Nadkarni, Girish N; Sharif, Kassem; Lahat, Adi Abstract: Gastric cancer (GC), a significant health burden worldwide, is typically diagnosed in the advanced stages due to its non-specific symptoms…
Effects of Mirikizumab on Histologic Resolution of Crohn’s Disease in a Randomized Controlled Phase 2 Trial.
Link: https://doi.org/S1542-3565(23)00948-5 Authors: Magro, Fernando; Protic, Marijana; De Hertogh, Gert; Chan, Lai Shan; Pollack, Paul; Jairath, Vipul; Carlier, Hilde; Hon, Emily; Feagan, Brian G; Harpaz, Noam; Pai, Rish; Reinisch, Walter Abstract: Histologic evaluation of mucosal…
Natural Language Processing Can Automate Extraction of Barrett’s Esophagus Endoscopy Quality Metrics.
Link: https://doi.org/10.1101/2023.07.11.23292529 Authors: Soroush, Ali; Diamond, Courtney J; Zylberberg, Haley M; May, Benjamin; Tatonetti, Nicholas; Abrams, Julian A; Weng, Chunhua Abstract: To develop an automated natural language processing (NLP) method for extracting high-fidelity Barrett’s Esophagus…
Potential kidney toxicity from the antiviral drug tenofovir: new indications, new formulations, and a new prodrug.
Link: https://doi.org/10.1097/MNH.0000000000000392 Authors: Chan, Lili; Asriel, Benjamin; Eaton, Ellen F; Wyatt, Christina M Abstract: The antiviral agent tenofovir is highly effective for the treatment of HIV and hepatitis B virus infections, and the older prodrug…
Visual Analytics to Leverage Anesthesia Electronic Health Record.
Link: https://doi.org/10.1213/ANE.0000000000006175 Authors: Kahn, Ronald A; Gal, Jonathan S; Hofer, Ira S; Wax, David B; Villar, Joshua I; Levin, Mathew A Abstract: Visual analytics is the science of analytical reasoning supported by interactive visual interfaces…
COVID-19
Clinical factors associated with hospital mortality in critically ill adult COVID-19 patients with AKI requiring CRRT: A multicenter study.
Link: https://doi.org/10.5414/CN111404 Authors: Cama-Olivares, Augusto; Tamhane, Ashutosh; Ortiz-Soriano, Victor; Farrell, Douglas; Wen, Huei Hsun; Takeuchi, Tomonori; Devansh, Patel; Galasso, Francesco; Chen, Jin; Chan, Lili; Tolwani, Ashita J; Nadkarni, Girish N; Neyra, Javier A Abstract: Acute…
Peripheral Transcriptomics in Acute and Long-Term Kidney Dysfunction in SARS-CoV2 Infection.
Link: https://doi.org/10.34067/KID.0000000727 Authors: Jayaraman, Pushkala; Rajagopal, Madhumitha; Paranjpe, Ishan; Suarez-Farinas, Mayte; Liharska, Lora; Thompson, Ryan; Del Valle, Diane Marie; Beckmann, Noam; Lund, Anina N; Gownivaripally, Pooja; Oh, Wonsuk; Gulamali, Faris F; Kauffman, Justin; Gonzalez-Kozlova, Edgar;…
Sex Differences in Long COVID.
Link: https://doi.org/10.1001/jamanetworkopen.2024.55430 Authors: Shah, Dimpy P; Thaweethai, Tanayott; Karlson, Elizabeth W; Bonilla, Hector; Horne, Benjamin D; Mullington, Janet M; Wisnivesky, Juan P; Hornig, Mady; Shinnick, Daniel J; Klein, Jonathan D; Erdmann, Nathaniel B; Brosnahan, Shari…
2024 Update of the RECOVER-Adult Long COVID Research Index.
Link: https://doi.org/10.1001/jama.2024.24184 Authors: Geng, Linda N; Erlandson, Kristine M; Hornig, Mady; Letts, Rebecca; Selvaggi, Caitlin; Ashktorab, Hassan; Atieh, Ornina; Bartram, Logan; Brim, Hassan; Brosnahan, Shari B; Brown, Jeanette; Castro, Mario; Charney, Alexander; Chen, Peter; Deeks,…
Measurement of circulating viral antigens post-SARS-CoV-2 infection in a multicohort study.
Link: https://doi.org/S1198-743X(24)00432-4 Authors: Swank, Zoe; Borberg, Ella; Chen, Yulu; Senussi, Yasmeen; Chalise, Sujata; Manickas-Hill, Zachary; Yu, Xu G; Li, Jonathan Z; Alter, Galit; Henrich, Timothy J; Kelly, J Daniel; Hoh, Rebecca; Goldberg, Sarah A; Deeks,…
Differentiation of Prior SARS-CoV-2 Infection and Postacute Sequelae by Standard Clinical Laboratory Measurements in the RECOVER Cohort.
Link: https://doi.org/10.7326/M24-0737 Authors: Erlandson, Kristine M; Geng, Linda N; Selvaggi, Caitlin A; Thaweethai, Tanayott; Chen, Peter; Erdmann, Nathan B; Goldman, Jason D; Henrich, Timothy J; Hornig, Mady; Karlson, Elizabeth W; Katz, Stuart D; Kim, C;…
Bioinformatics
Time-to-Event Genome-Wide Association Study for Incident Cardiovascular Disease in People With Type 2 Diabetes.
Link: https://doi.org/10.2337/dc23-2274 Authors: Kwak, Soo Heon; Hernandez-Cancela, Ryan B; DiCorpo, Daniel A; Condon, David E; Merino, Jordi; Wu, Peitao; Brody, Jennifer A; Yao, Jie; Guo, Xiuqing; Ahmadizar, Fariba; Meyer, Mariah; Sincan, Murat; Mercader, Josep M;…
Local large language models for privacy-preserving accelerated review of historic echocardiogram reports.
Link: https://doi.org/10.1093/jamia/ocae085 Authors: Vaid, Akhil; Duong, Son Q; Lampert, Joshua; Kovatch, Patricia; Freeman, Robert; Argulian, Edgar; Croft, Lori; Lerakis, Stamatios; Goldman, Martin; Khera, Rohan; Nadkarni, Girish N Abstract: The study developed framework that leverages an…
Deep Learning-Based Electrocardiogram Analysis Predicts Biventricular Dysfunction and Dilation in Congenital Heart Disease.
Link: https://doi.org/S0735-1097(24)07676-9 Authors: Mayourian, Joshua; Gearhart, Addison; La Cava, William G; Vaid, Akhil; Nadkarni, Girish N; Triedman, John K; Powell, Andrew J; Wald, Rachel M; Valente, Anne Marie; Geva, Tal; Duong, Son Q; Ghelani, Sunil…
Peripheral Transcriptomics in Acute and Long-Term Kidney Dysfunction in SARS-CoV2 Infection.
Link: https://doi.org/10.34067/KID.0000000727 Authors: Jayaraman, Pushkala; Rajagopal, Madhumitha; Paranjpe, Ishan; Suarez-Farinas, Mayte; Liharska, Lora; Thompson, Ryan; Del Valle, Diane Marie; Beckmann, Noam; Lund, Anina N; Gownivaripally, Pooja; Oh, Wonsuk; Gulamali, Faris F; Kauffman, Justin; Gonzalez-Kozlova, Edgar;…
Sex Differences in Long COVID.
Link: https://doi.org/10.1001/jamanetworkopen.2024.55430 Authors: Shah, Dimpy P; Thaweethai, Tanayott; Karlson, Elizabeth W; Bonilla, Hector; Horne, Benjamin D; Mullington, Janet M; Wisnivesky, Juan P; Hornig, Mady; Shinnick, Daniel J; Klein, Jonathan D; Erdmann, Nathaniel B; Brosnahan, Shari…
Visual-textual integration in LLMs for medical diagnosis: A preliminary quantitative analysis.
Link: https://doi.org/10.1016/j.csbj.2024.12.019 Authors: Agbareia, Reem; Omar, Mahmud; Soffer, Shelly; Glicksberg, Benjamin S; Nadkarni, Girish N; Klang, Eyal Abstract: Visual data from images is essential for many medical diagnoses. This study evaluates the performance of multimodal…
Machine Learning
Evaluating the accuracy of a state-of-the-art large language model for prediction of admissions from the emergency room.
Link: https://doi.org/10.1093/jamia/ocae103 Authors: Glicksberg, Benjamin S; Timsina, Prem; Patel, Dhaval; Sawant, Ashwin; Vaid, Akhil; Raut, Ganesh; Charney, Alexander W; Apakama, Donald; Carr, Brendan G; Freeman, Robert; Nadkarni, Girish N; Klang, Eyal Abstract: Artificial intelligence (AI)…
Transforming Cardiovascular Care With Artificial Intelligence: From Discovery to Practice: JACC State-of-the-Art Review.
Link: https://doi.org/S0735-1097(24)07195-X Authors: Khera, Rohan; Oikonomou, Evangelos K; Nadkarni, Girish N; Morley, Jessica R; Wiens, Jenna; Butte, Atul J; Topol, Eric J Abstract: Artificial intelligence (AI) has the potential to transform every facet of cardiovascular…
Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model.
Link: https://doi.org/10.1093/jamia/ocae260 Authors: Patra, Braja Gopal; Lepow, Lauren A; Kasi Reddy Jagadeesh Kumar, Praneet; Vekaria, Veer; Sharma, Mohit Manoj; Adekkanattu, Prakash; Fennessy, Brian; Hynes, Gavin; Landi, Isotta; Sanchez-Ruiz, Jorge A; Ryu, Euijung; Biernacka, Joanna M;…
Deep Learning-Based Electrocardiogram Analysis Predicts Biventricular Dysfunction and Dilation in Congenital Heart Disease.
Link: https://doi.org/S0735-1097(24)07676-9 Authors: Mayourian, Joshua; Gearhart, Addison; La Cava, William G; Vaid, Akhil; Nadkarni, Girish N; Triedman, John K; Powell, Andrew J; Wald, Rachel M; Valente, Anne Marie; Geva, Tal; Duong, Son Q; Ghelani, Sunil…
Clinical factors associated with hospital mortality in critically ill adult COVID-19 patients with AKI requiring CRRT: A multicenter study.
Link: https://doi.org/10.5414/CN111404 Authors: Cama-Olivares, Augusto; Tamhane, Ashutosh; Ortiz-Soriano, Victor; Farrell, Douglas; Wen, Huei Hsun; Takeuchi, Tomonori; Devansh, Patel; Galasso, Francesco; Chen, Jin; Chan, Lili; Tolwani, Ashita J; Nadkarni, Girish N; Neyra, Javier A Abstract: Acute…
Artificial intelligence-guided detection of under-recognised cardiomyopathies on point-of-care cardiac ultrasonography: a multicentre study.
Link: https://doi.org/S2589-7500(24)00249-8 Authors: Oikonomou, Evangelos K; Vaid, Akhil; Holste, Gregory; Coppi, Andreas; McNamara, Robert L; Baloescu, Cristiana; Krumholz, Harlan M; Wang, Zhangyang; Apakama, Donald J; Nadkarni, Girish N; Khera, Rohan Abstract: Point-of-care ultrasonography (POCUS) enables…
LLM-NLP
Evaluating the accuracy of a state-of-the-art large language model for prediction of admissions from the emergency room.
Link: https://doi.org/10.1093/jamia/ocae103 Authors: Glicksberg, Benjamin S; Timsina, Prem; Patel, Dhaval; Sawant, Ashwin; Vaid, Akhil; Raut, Ganesh; Charney, Alexander W; Apakama, Donald; Carr, Brendan G; Freeman, Robert; Nadkarni, Girish N; Klang, Eyal Abstract: Artificial intelligence (AI)…
Transforming Cardiovascular Care With Artificial Intelligence: From Discovery to Practice: JACC State-of-the-Art Review.
Link: https://doi.org/S0735-1097(24)07195-X Authors: Khera, Rohan; Oikonomou, Evangelos K; Nadkarni, Girish N; Morley, Jessica R; Wiens, Jenna; Butte, Atul J; Topol, Eric J Abstract: Artificial intelligence (AI) has the potential to transform every facet of cardiovascular…
Local large language models for privacy-preserving accelerated review of historic echocardiogram reports.
Link: https://doi.org/10.1093/jamia/ocae085 Authors: Vaid, Akhil; Duong, Son Q; Lampert, Joshua; Kovatch, Patricia; Freeman, Robert; Argulian, Edgar; Croft, Lori; Lerakis, Stamatios; Goldman, Martin; Khera, Rohan; Nadkarni, Girish N Abstract: The study developed framework that leverages an…
Large language model uncertainty proxies: discrimination and calibration for medical diagnosis and treatment.
Link: https://doi.org/10.1093/jamia/ocae254 Authors: Savage, Thomas; Wang, John; Gallo, Robert; Boukil, Abdessalem; Patel, Vishwesh; Safavi-Naini, Seyed Amir Ahmad; Soroush, Ali; Chen, Jonathan H Abstract: The inability of large language models (LLMs) to communicate uncertainty is a…
Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model.
Link: https://doi.org/10.1093/jamia/ocae260 Authors: Patra, Braja Gopal; Lepow, Lauren A; Kasi Reddy Jagadeesh Kumar, Praneet; Vekaria, Veer; Sharma, Mohit Manoj; Adekkanattu, Prakash; Fennessy, Brian; Hynes, Gavin; Landi, Isotta; Sanchez-Ruiz, Jorge A; Ryu, Euijung; Biernacka, Joanna M;…
Deep Learning-Based Electrocardiogram Analysis Predicts Biventricular Dysfunction and Dilation in Congenital Heart Disease.
Link: https://doi.org/S0735-1097(24)07676-9 Authors: Mayourian, Joshua; Gearhart, Addison; La Cava, William G; Vaid, Akhil; Nadkarni, Girish N; Triedman, John K; Powell, Andrew J; Wald, Rachel M; Valente, Anne Marie; Geva, Tal; Duong, Son Q; Ghelani, Sunil…
Machine Vision
Local large language models for privacy-preserving accelerated review of historic echocardiogram reports.
Link: https://doi.org/10.1093/jamia/ocae085 Authors: Vaid, Akhil; Duong, Son Q; Lampert, Joshua; Kovatch, Patricia; Freeman, Robert; Argulian, Edgar; Croft, Lori; Lerakis, Stamatios; Goldman, Martin; Khera, Rohan; Nadkarni, Girish N Abstract: The study developed framework that leverages an…
Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model.
Link: https://doi.org/10.1093/jamia/ocae260 Authors: Patra, Braja Gopal; Lepow, Lauren A; Kasi Reddy Jagadeesh Kumar, Praneet; Vekaria, Veer; Sharma, Mohit Manoj; Adekkanattu, Prakash; Fennessy, Brian; Hynes, Gavin; Landi, Isotta; Sanchez-Ruiz, Jorge A; Ryu, Euijung; Biernacka, Joanna M;…
Deep Learning-Based Electrocardiogram Analysis Predicts Biventricular Dysfunction and Dilation in Congenital Heart Disease.
Link: https://doi.org/S0735-1097(24)07676-9 Authors: Mayourian, Joshua; Gearhart, Addison; La Cava, William G; Vaid, Akhil; Nadkarni, Girish N; Triedman, John K; Powell, Andrew J; Wald, Rachel M; Valente, Anne Marie; Geva, Tal; Duong, Son Q; Ghelani, Sunil…
Artificial intelligence-guided detection of under-recognised cardiomyopathies on point-of-care cardiac ultrasonography: a multicentre study.
Link: https://doi.org/S2589-7500(24)00249-8 Authors: Oikonomou, Evangelos K; Vaid, Akhil; Holste, Gregory; Coppi, Andreas; McNamara, Robert L; Baloescu, Cristiana; Krumholz, Harlan M; Wang, Zhangyang; Apakama, Donald J; Nadkarni, Girish N; Khera, Rohan Abstract: Point-of-care ultrasonography (POCUS) enables…
The role of deep learning in diagnostic imaging of spondyloarthropathies: a systematic review.
Link: https://doi.org/10.1007/s00330-024-11261-x Authors: Omar, Mahmud; Watad, Abdulla; McGonagle, Dennis; Soffer, Shelly; Glicksberg, Benjamin S; Nadkarni, Girish N; Klang, Eyal Abstract: Diagnostic imaging is an integral part of identifying spondyloarthropathies (SpA), yet the interpretation of these…
Deep Learning for Contrast Enhanced Mammography – A Systematic Review.
Link: https://doi.org/10.1016/j.acra.2024.11.035 Authors: Sorin, Vera; Sklair-Levy, Miri; Glicksberg, Benjamin S; Konen, Eli; Nadkarni, Girish N; Klang, Eyal Abstract: Contrast-enhanced mammography (CEM) is a relatively novel imaging technique that enables both anatomical and functional breast imaging,…
Recurrent Learning
Comparison of Approaches for Prediction of Renal Replacement Therapy-Free Survival in Patients with Acute Kidney Injury.
Link: https://doi.org/10.1159/000513700 Authors: Pattharanitima, Pattharawin; Vaid, Akhil; Jaladanki, Suraj K; Paranjpe, Ishan; O’Hagan, Ross; Chauhan, Kinsuk; Van Vleck, Tielman T; Duffy, Aine; Chaudhary, Kumardeep; Glicksberg, Benjamin S; Neyra, Javier A; Coca, Steven G; Chan, Lili;…
Contrastive Learning Improves Critical Event Prediction in COVID-19 Patients.
Link: https://doi.org/arXiv:2101.04013v1 Authors: Wanyan, Tingyi; Honarvar, Hossein; Jaladanki, Suraj K; Zang, Chengxi; Naik, Nidhi; Somani, Sulaiman; Freitas, Jessica K De; Paranjpe, Ishan; Vaid, Akhil; Miotto, Riccardo; Nadkarni, Girish N; Zitnik, Marinka; ArifulAzad, ; Wang, Fei;…
Relational Learning Improves Prediction of Mortality in COVID-19 in the Intensive Care Unit.
Link: https://doi.org/10.1109/tbdata.2020.3048644 Authors: Wanyan, Tingyi; Vaid, Akhil; De Freitas, Jessica K; Somani, Sulaiman; Miotto, Riccardo; Nadkarni, Girish N; Azad, Ariful; Ding, Ying; Glicksberg, Benjamin S Abstract: Traditional Machine Learning (ML) models have had limited success…
Signal Processing
Deep Learning-Based Electrocardiogram Analysis Predicts Biventricular Dysfunction and Dilation in Congenital Heart Disease.
Link: https://doi.org/S0735-1097(24)07676-9 Authors: Mayourian, Joshua; Gearhart, Addison; La Cava, William G; Vaid, Akhil; Nadkarni, Girish N; Triedman, John K; Powell, Andrew J; Wald, Rachel M; Valente, Anne Marie; Geva, Tal; Duong, Son Q; Ghelani, Sunil…
Artificial intelligence-guided detection of under-recognised cardiomyopathies on point-of-care cardiac ultrasonography: a multicentre study.
Link: https://doi.org/S2589-7500(24)00249-8 Authors: Oikonomou, Evangelos K; Vaid, Akhil; Holste, Gregory; Coppi, Andreas; McNamara, Robert L; Baloescu, Cristiana; Krumholz, Harlan M; Wang, Zhangyang; Apakama, Donald J; Nadkarni, Girish N; Khera, Rohan Abstract: Point-of-care ultrasonography (POCUS) enables…
Deep Learning for Contrast Enhanced Mammography – A Systematic Review.
Link: https://doi.org/10.1016/j.acra.2024.11.035 Authors: Sorin, Vera; Sklair-Levy, Miri; Glicksberg, Benjamin S; Konen, Eli; Nadkarni, Girish N; Klang, Eyal Abstract: Contrast-enhanced mammography (CEM) is a relatively novel imaging technique that enables both anatomical and functional breast imaging,…
Artificial intelligence-guided detection of under-recognized cardiomyopathies on point-of-care cardiac ultrasound: a multi-center study.
Link: https://doi.org/10.1101/2024.03.10.24304044 Authors: Oikonomou, Evangelos K; Vaid, Akhil; Holste, Gregory; Coppi, Andreas; McNamara, Robert L; Baloescu, Cristiana; Krumholz, Harlan M; Wang, Zhangyang; Apakama, Donald J; Nadkarni, Girish N; Khera, Rohan Abstract: Point-of-care ultrasonography (POCUS) enables…
Characterizing cell type specific transcriptional differences between the living and postmortem human brain.
Link: https://doi.org/10.1101/2024.05.01.24306590 Authors: Vornholt, Eric; Liharska, Lora E; Cheng, Esther; Hashemi, Alice; Park, You Jeong; Ziafat, Kimia; Wilkins, Lillian; Silk, Hannah; Linares, Lisa M; Thompson, Ryan C; Sullivan, Brendan; Moya, Emily; Nadkarni, Girish N; Sebra,…
Pediatric ECG-Based Deep Learning to Predict Left Ventricular Dysfunction and Remodeling.
Link: https://doi.org/10.1161/CIRCULATIONAHA.123.067750 Authors: Mayourian, Joshua; La Cava, William G; Vaid, Akhil; Nadkarni, Girish N; Ghelani, Sunil J; Mannix, Rebekah; Geva, Tal; Dionne, Audrey; Alexander, Mark E; Duong, Son Q; Triedman, John K Abstract: Artificial intelligence-enhanced…
Time Series
Distinguishing neonatal culture-negative sepsis from rule-out sepsis with artificial intelligence-derived graphs.
Link: https://doi.org/10.1038/s41390-024-03458-z Authors: Holmes, Emma; Kauffman, Justin; Juliano, Courtney; Duchon, Jennifer; Nadkarni, Girish N Abstract: Novel artificial intelligence methods can aide in identification of cases of conditions using only unstructured electronic health record data. This…
A novel method leveraging time series data to improve subphenotyping and application in critically ill patients with COVID-19.
Link: https://doi.org/S0933-3657(23)00264-6 Authors: Oh, Wonsuk; Jayaraman, Pushkala; Tandon, Pranai; Chaddha, Udit S; Kovatch, Patricia; Charney, Alexander W; Glicksberg, Benjamin S; Nadkarni, Girish N Abstract: Computational subphenotyping, a data-driven approach to understanding disease subtypes, is a…
Interatrial Block Association With Adverse Cardiovascular Outcomes in Patients Without a History of Atrial Fibrillation.
Link: https://doi.org/S2405-500X(23)00254-2 Authors: Lampert, Joshua; Power, David; Havaldar, Shreyas; Govindarajulu, Usha; Kawamura, Iwanari; Maan, Abhishek; Miller, Marc A; Menon, Kartikeya; Koruth, Jacob; Whang, William; Bagiella, Emilia; Bayes-Genis, Antoni; Musikantow, Daniel; Turagam, Mohit; Bayes de Luna,…
Using sequence clustering to identify clinically relevant subphenotypes in patients with COVID-19 admitted to the intensive care unit.
Link: https://doi.org/10.1093/jamia/ocab252 Authors: Oh, Wonsuk; Jayaraman, Pushkala; Sawant, Ashwin S; Chan, Lili; Levin, Matthew A; Charney, Alexander W; Kovatch, Patricia; Glicksberg, Benjamin S; Nadkarni, Girish N Abstract: The novel coronavirus disease 2019 (COVID-19) has heterogenous…
Visual Analytics to Leverage Anesthesia Electronic Health Record.
Link: https://doi.org/10.1213/ANE.0000000000006175 Authors: Kahn, Ronald A; Gal, Jonathan S; Hofer, Ira S; Wax, David B; Villar, Joshua I; Levin, Mathew A Abstract: Visual analytics is the science of analytical reasoning supported by interactive visual interfaces…
Acute Kidney Injury in Patients Hospitalized With COVID-19 in New York City: Temporal Trends From March 2020 to April 2021.
Link: https://doi.org/10.1016/j.xkme.2021.06.008 Authors: Dellepiane, Sergio; Vaid, Akhil; Jaladanki, Suraj K; Coca, Steven; Fayad, Zahi A; Charney, Alexander W; Bottinger, Erwin P; He, John Cijiang; Glicksberg, Benjamin S; Chan, Lili; Nadkarni, Girish Abstract:
Deep Learning
Deep Learning-Based Electrocardiogram Analysis Predicts Biventricular Dysfunction and Dilation in Congenital Heart Disease.
Link: https://doi.org/S0735-1097(24)07676-9 Authors: Mayourian, Joshua; Gearhart, Addison; La Cava, William G; Vaid, Akhil; Nadkarni, Girish N; Triedman, John K; Powell, Andrew J; Wald, Rachel M; Valente, Anne Marie; Geva, Tal; Duong, Son Q; Ghelani, Sunil…
Artificial intelligence-guided detection of under-recognised cardiomyopathies on point-of-care cardiac ultrasonography: a multicentre study.
Link: https://doi.org/S2589-7500(24)00249-8 Authors: Oikonomou, Evangelos K; Vaid, Akhil; Holste, Gregory; Coppi, Andreas; McNamara, Robert L; Baloescu, Cristiana; Krumholz, Harlan M; Wang, Zhangyang; Apakama, Donald J; Nadkarni, Girish N; Khera, Rohan Abstract: Point-of-care ultrasonography (POCUS) enables…
The role of deep learning in diagnostic imaging of spondyloarthropathies: a systematic review.
Link: https://doi.org/10.1007/s00330-024-11261-x Authors: Omar, Mahmud; Watad, Abdulla; McGonagle, Dennis; Soffer, Shelly; Glicksberg, Benjamin S; Nadkarni, Girish N; Klang, Eyal Abstract: Diagnostic imaging is an integral part of identifying spondyloarthropathies (SpA), yet the interpretation of these…
Deep Learning for Contrast Enhanced Mammography – A Systematic Review.
Link: https://doi.org/10.1016/j.acra.2024.11.035 Authors: Sorin, Vera; Sklair-Levy, Miri; Glicksberg, Benjamin S; Konen, Eli; Nadkarni, Girish N; Klang, Eyal Abstract: Contrast-enhanced mammography (CEM) is a relatively novel imaging technique that enables both anatomical and functional breast imaging,…
Detection of neurologic changes in critically ill infants using deep learning on video data: a retrospective single center cohort study.
Link: https://doi.org/10.1016/j.eclinm.2024.102919 Authors: Gleason, Alec; Richter, Florian; Beller, Nathalia; Arivazhagan, Naveen; Feng, Rui; Holmes, Emma; Glicksberg, Benjamin S; Morton, Sarah U; La Vega-Talbott, Maite; Fields, Madeline; Guttmann, Katherine; Nadkarni, Girish N; Richter, Felix Abstract: Infant…
Leveraging Artificial Intelligence and Data Science for Integration of Social Determinants of Health in Emergency Medicine: Scoping Review.
Link: https://doi.org/10.2196/57124 Authors: Abbott, Ethan E; Apakama, Donald; Richardson, Lynne D; Chan, Lili; Nadkarni, Girish N Abstract: Social determinants of health (SDOH) are critical drivers of health disparities and patient outcomes. However, accessing and collecting…